YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FXYD5_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPPSQLCLL TIVALILPSE GQTPEKPRSS FTAHQSSVTT HVPVPDQTSP GVQTTPPIWT  60
   61 SEAGEATGSQ TAAKTKTQQL TEMATANPVT DPGPLTSSEK GTPALSRIKS PSPPKGYMPP 120
  121 SYIENPLDPN ENSPFYYDNT TLRKRGLLVA AVLFITGIII LTSGKCRQFS QLCLNRHR

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	146	0.99
Transmembrane Helix	147	166	0.61
Cytoplasmic	167	178	0.61