YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55667083
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKVQTTLL FLAVGEFSVG ILGNAFIGLV NCMDWVKKRK IASIDLILTS LAISRICLLC  60
   61 VILLDCFILV LYPDVYATGK EMRIIDFFWT LTNHLSIWFA TCLSIYYLFR IANFFHPLFL 120
  121 WMKWRIDRVI SWILLGCVVL SVFISLPATE NLNADFRFCV KAKRKTNLTW SCRVNKTQHA 180
  181 STKLFLNLAT LLPFCVCLMS FFLLILSLRR HIRRMQLSAT GCRDPSTEAH VRALKAVISF 240
  241 LLLFIAYYLS FLVATSSYFM PETELAVIFG ESIALIYPSS HSFILILGNN KLRHASLKVI 300
  301 WKVMSILKGR KFQQHKQIGR ETMLF

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.91
Transmembrane Helix	9	32	0.85
Cytoplasmic	33	50	0.85
Transmembrane Helix	51	72	0.91
Non-Cytoplasmic	73	89	0.90
Transmembrane Helix	90	109	0.87
Cytoplasmic	110	128	0.80
Transmembrane Helix	129	148	0.95
Non-Cytoplasmic	149	187	0.95
Transmembrane Helix	188	208	0.94
Cytoplasmic	209	235	0.90
Transmembrane Helix	236	255	0.89
Non-Cytoplasmic	256	266	0.74
Transmembrane Helix	267	288	0.86
Cytoplasmic	289	325	0.93