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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: UBC3_MIMIV
Protein type: Transmembrane
Type Confidence: 0.75
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDYLGSFYN PLTLQKKLKY IHHIIINYIT NSILYFFLIM QSKNNPKHNS MKFKEQTESP  60
   61 ILNQSKLVNT LDIIKDEINK WEEKNTDKDI KIVSIDNGKI VLSMVYGKQH IIEILCPKDY 120
  121 PNVKSGFSCK EIKTVNTIPL SFISQANNQL KSKKNLSVHR IISHLSTTFQ NYKKALKSKV 180
  181 SKDKMKDKSE SNSEHEQESK SVVSNEIPSE VSIDSKLTKD INFINDLIKE ANKCSNDVPS 240
  241 DSDETHQEVD DRPLTEEVVV PDPTRIVRRR NSKLQTGSTK IKIFGKSKNS GPSSSKTSIS 300
  301 SMSKVEELED KNPYLQEQDI MSIIQDEWNK VQESKSICPT TNEDNNDLDN LINEVERLVQ 360
  361 ETKDQETKDQ ETKDQKEIWA SSLTIEEPNG ENFEEFSWEV PNETSQITVV EPVQEATEEP 420
  421 VQNVTEELIQ LVADEPVQET VKDSVQEVAE ESVQETTVEA VQEIAEESVQ QVVEESVQET 480
  481 TVEPVQEVAE EAVQQVVEES VQETTVEPVQ EVAEEPVQQE VAEEPVQQEV AEEPVQQEVA 540
  541 EEPVQEVAEE PVQKATEELV QQEVAEDIVK LDVTVQNDFS DHSDSPEPSD SSDSEEEITN 600
  601 SNNLGRYFKI YDPTTGKTTG VYVGKTPTQA ANKAFIKTFS NDNTGNKKEF YLQEYTGNKP 660
  661 GKIYKYEGTR QKLNQPQKIS IPLYGDGQYK TITYNYKNTV VKKNVPDSIK NPPKTIKKSI 720
  721 KPVKKSIKPV KKLSTTKLDS QTNSVKEKSE NKDIINYNDT GDKYGLYIDF GKFFKNSKIP 780
  781 FDLEKLRDNA LKLSNQENQD DNYSTMKLRN FKNNNAVNLM INDFTKLYND GVKNGYNIEP 840
  841 VNNNIYDLDI LLSSNFLDKD SVLYQDMINL KIDHIKINIK INHKMYPFYP PQVSLIRPTI 900
  901 ENNVAAIIAT IDYLFANKWN PMISIVNIVN DIRNILNKYG ALDEKKYQNN LDPIFHDLVE 960
  961 LSLLTGTQCS MYQSDQKVID LSNNSTNEKQ SKYWKKGTGF GHSGLSDWDF NQTKENIKNR1020
 1021 ELKIYQCLRK IVVKLTKIIL GKNQVDVINI LKESCFIPYL KLVFIDGSLF DLVKDLSYFE1080
 1081 LVLNSMRILT KEYLPLFLHK YNDKSLLEVL DQFNKDCHSY LNTLKNIKES DCQNEIDIIE1140
 1141 NFMSFYKRLS TSIEKFNEIT ESNNKEEVIS NDVKDLYKIT LGNEVFQEYN LDLNKFANML1200
 1201 TNDTKKEGLI HKDALKAISR ELLSHSKNLP VEYGSSIYYR YSPENIRYHE FIITGPEDSP1260
 1261 YDSGCFHFRM YNPSAYPNTS PFVSMTTTGH GSVRFNPNLY ADGKVCLSIL GTWRGQAGES1320
 1321 WIPGVSSMLQ VMISIQSLVL ISEPYFNEPG YESSRGTDKG NKLSTEYNQK VRFNCMKWAM1380
 1381 IDVIKNPVPG FESMIKKHFS IKAPHIKQVC QTWINEAPDN NKSEYQKLYD ELIGLLDSLV1440
 1441 A

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