YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55651326
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPSTLPPG GEEGLGTAWP SAANASSAPA EAEEAVAGPG DARAAGMVAI QCIYALVCLV  60
   61 GLVGNALVIF VILRYAKMKT ATNIYLLNLA VADELFMLSV PFVASSAALR HWPFGSVLCR 120
  121 VVLSVDGLNM FTSVFCLTVL SVDRYVAVVH PLRAATYRRP SVAKFINLGV WLASLLVTLP 180
  181 IAIFADTRPT RGGQAVACNL QWPHPAWSAV FVVYTFLLGF LLPVLAIGLC YLLIVGKMRA 240
  241 VALRAGWQQR RRSEKKITRL VLMVVAVFVL CWMPFYVVQL LNLFVTSLDA TVNHVSLILS 300
  301 YANSCANPIL YGFLSDNFRR SFQRVLCLRC CLLEGAGGAE EEPLDYYATA LKSKGGAGCM 360
  361 CPPLPCQQEA LQPEPGRKRI PLTRTTTF

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.87
Transmembrane Helix	50	73	0.91
Cytoplasmic	74	83	0.81
Transmembrane Helix	84	108	0.81
Non-Cytoplasmic	109	126	0.73
Transmembrane Helix	127	147	0.80
Cytoplasmic	148	164	0.86
Transmembrane Helix	165	185	0.93
Non-Cytoplasmic	186	211	0.93
Transmembrane Helix	212	235	0.96
Cytoplasmic	236	256	0.94
Transmembrane Helix	257	278	0.93
Non-Cytoplasmic	279	294	0.86
Transmembrane Helix	295	314	0.77
Cytoplasmic	315	388	0.80