YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55645541
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKCLKAGF SSGSLKSPGG ASGGSTRVSA MYSSSSCKLP SLSRVARSFS ACSVGLGRSS  60
   61 YRATSCLPAL CLPAGGFATS YSVGGGWFGE GILTGNEKET MQSLNDRLAS YLEKVRQLEQ 120
  121 ENASLESRIR EWCEQQVPYM CPDYQSYFRT IEELQKKTLC SKAENARLVV EIDNAKLAAD 180
  181 DFRTKYETEV SLRQLVESDI NGLRRILDDL TLCKSDLEAQ VESLKEELLC LKKNHEEEVN 240
  241 SLRCQLGDRL NVEVDAAPPV DLNRVLEEMR CQYETLVENN RRDAEDWFDT QSEELNQQVV 300
  301 SSSEQLQSCQ AEIIELRRTV NALEIELQAQ HSMRDALEST LEETEARYSS QLAQMQCMIT 360
  361 NVEAQLAEIR ADLERQNQEY QVLLDVRARL ECEINTYRGL LESEDSKLPC NPCAPDYSPS 420
  421 KSCLPCLPAA SCGPSAARTN CSPRPICVPC PGGRF

Type	Start	End	Confidence
Signal Peptide	1	23	0.59
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	455	0.98