YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40253518, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQRRAPPRT AGLRAPPAAA AASSRRTPPL RVAGRAACPA ASGTTAPSFS MMFNHCAVSY  60
   61 LFRTLLPIPT AFRSTVRVRL TSPAFLPSRR NFEGYIPQSC SGSSLQIYSQ SSLLSLSPSS 120
  121 ALVVSSQLNS SDVAQRSEEW FALRKDKLTT STFSTALGFW AGNRRSELWS EKVFGSTEIK 180
  181 LEDAARSAMN WGTVNESVAI EQYTSITGRS VGSLGFAVHT EANFGWLGAS PDGVLGCDPD 240
  241 GGILEVKCPF NKGKPELALP WRAMPYYYMP QVQGLMEIMG RDWVELYCWT PNGSSVFRVP 300
  301 RDRGYWELIH EVLRDFWWGN VMPARELVLL GKEAEARSFE PQPKHRLTNL VIFRSRKLAS 360
  361 EAKLLCKDIG GHVEFFP

Type	Start	End	Confidence
Signal Peptide	1	21	0.78
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	377	0.97