YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125604318, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATALHLPP LLLARRLRFS SAAASTSTSR RTTRLSAQLD DTAAASTSTS TSDKPAAASS  60
   61 FAPPPDFKPP EPKTFEVKPG QSDDIVTASL AIPFRLGTGV FALGYSVSLV SPDEVAPDEY 120
  121 ALDFQGRKVK ESSKIGQCPR PEKPIEIYEF EGCPFCRKVR EMVAVLDLDV LFYPCPKNGP 180
  181 TFRPKVLEMG GKQQFPYMVD PNTGVAMYES DAIIKYLADK YGDGTVPIML SLGILTTITA 240
  241 GLAMSGRSGK GSKYTPAKLP PEPIELWAYE GSPFCKIVRE TLVELELPHL LHSCARGSPR 300
  301 RQEFLKKYGI FQAPYIEDPN TGVKMFESAD IIDYLRATYA A

Type	Start	End	Confidence
Signal Peptide	1	24	0.91
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	341	0.96