YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51965034, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLPSPVF PTAAAAAAST SSSSRCRCRC RITTSSSAHG WSNCQGWRLH HRVWAAQAAD  60
   61 QQGGVQQQQQ QEENEDGVVD SNVLPYCSIN RKEKKTIGEM EQEFLQALQA FYYDKKAVMS 120
  121 NEEFDNLKEE LMWEGSSVVM LSPDEQRLLE ASMAYVAGNP IMTDAEFDEL KLRLRKEGSE 180
  181 IVQEGPRCSL RSRKVYSDLT VDYFKMFLLN VPAAVLALTL FFFLDDLTGF EITYLLELPE 240
  241 PFSFIFTWFA ALPLIFWVAQ AITSAIVKDF LILKGPCPNC GNENLSFFGT ILSVPSGGAR 300
  301 NSVKCANCSS SLVYDSASRL ITLPETAEA

Type	Start	End	Confidence
Signal Peptide	1	26	0.78
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	243	0.78
Transmembrane Helix	244	266	0.81
Cytoplasmic	267	329	0.59