YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50947631, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALAGTAAA SLPALPSHQP RSRLAPRSLA LPGGRSCCGP LRAAAAGGGG GAKDDAQAGV  60
   61 TPNGSPVIKP KSDSALSSQN GVLGSTKTDK PHTTLSTHTT TDSSGSRAGL FRTPISGGVQ 120
  121 SATFAHGLPP PALAVRNLME QARFAHLCTV MSGMHHRRTG YPFGSLVDFS NDSMGHPIFS 180
  181 LSPLAIHTRN LLSDPRCTLV VQVPGWSGLS NARVTIFGDV YPLPEDQQEW AHKQYVAKHQ 240
  241 QWASQQWGNF YYYRMQNISD IYFIGGFGTV AWVDVKEYEA IQPDKIAVDG GEQSLKELNA 300
  301 IFSKPLREFL SSEGEVDDAA LISVDSKGID IRVRQGAQFN IQRLAFDVPH KVETLEEAKR 360
  361 ALHKIIKTTS K

Type	Start	End	Confidence
Signal Peptide	1	16	0.83
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	371	0.99