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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50947187, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.76
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRWRATAT RLLVLLACAC AVFVPRCHCV GDQGEALLRW KASLLNGTGG GGGGLDSWRA  60
   61 SDASPCRWLG VSCDARGDVV AVTIKTVDLG GALPAASVLP LARSLKTLVL SGTNLTGAIP 120
  121 KELGDLAELS TLDLTKNQLT GAIPAELCRL RKLQSLALNS NSLRGAIPDA IGNLTGLTSL 180
  181 TLYDNELSGA IPASIGNLKK LQVLRAGGNQ ALKGPLPPEI GGCTDLTMLG LAETGISGSL 240
  241 PATIGNLKKI QTIAIYTAML TGSIPESIGN CTELTSLYLY QNTLSGGIPP QLGQLKKLQT 300
  301 VLLWQNQLVG TIPPEIGNCK ELVLIDLSLN ELTGPIPRSF GGLPNLQQLQ LSTNKLTGVI 360
  361 PPELSNCTSL TDIEVDNNQL TGAIGVDFPR LRNLTLFYAW QNRLTGGIPA SLAQCEGLQS 420
  421 LDLSYNNLTG AIPRELFALQ NLTKLLLLSN DLAGFIPPEI GNCTNLYRLR LNGNRLSGTI 480
  481 PAEIGNLKNL NFLDLGGNRL TGPLPAAMSG CDNLEFMDLH SNALTGTLPG DLPRSLQFVD 540
  541 VSDNRLTGVL GAGIGSLPEL TKLNLGKNRI SGGIPPELGS CEKLQLLDLG DNALSGGIPP 600
  601 ELGKLPFLEI SLNLSCNRLS GEIPSQFAGL DKLGCLDVSY NQLSGSLEPL ARLENLVTLN 660
  661 ISYNAFSGEL PDTAFFQKLP INDIAGNHLL VVGSGGDEAT RRAAISSLKL AMTVLAVVSA 720
  721 LLLLSATYVL ARSRRSDSSG AIHGAGEAWE VTLYQKLDFS VDEVVRSLTS ANVIGTGSSG 780
  781 VVYRVGLPSG DSVAVKKMWS SDEAGAFRNE IAALGSIRHR NIVRLLGWGA NRSTKLLFYT 840
  841 YLPNGSLSGF LHRGGVKGAA EWAPRYDIAL GVAHAVAYLH HDCLPAILHG DIKAMNVLLG 900
  901 PRNEPYLADF GLARVLSGAV DSGSAKVDSS KPRIAGSYGY IAPGYASMQR ISEKSDVYSF 960
  961 GVVVLEILTG RHPLDPTLPG GTHLVQWVRD HLQAKRAVAE LLDPRLRGKP EAQVQEMLQV1020
 1021 FSVAVLCIAH RADDRPAMKD VVALLKEIRR PVEGGATGGG EGKEQNAAAA AAAPPAAERR1080
 1081 SPARSTLPKG GSSSCSFAMS DYSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle