YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25553690, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVATGVLVSG GGGSWYLCAS WTANRRHGGQ IIPEQEPQSK IEFPDLDGLG GGGGGASGSG  60
   61 CRHPARVRVC VGGGDGVCVA PGTSVVVVEV ATVSALSSAL RRLSSPFAVP ELAVALFPSV 120
  121 APMLAVAPAG VGMCAMIGAS SSVGGSGWLV VIYILLQAEA FGSLVIGCLF CSKSYGSMLQ 180
  181 VALSLAISGL KARQKSIGSL SKAPLLLVGW STFWPSLLIP SSRSRTWFVI RVELGPPVQF 240
  241 RLSGLLEFLR FNDESYGDVL LSPVTLTPKI YGSTTNLDLV PFPWRQPKGI NGLSSGVHFN 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	111	0.79
Transmembrane Helix	112	139	0.74
Non-Cytoplasmic	140	148	0.51
Transmembrane Helix	149	177	0.71
Cytoplasmic	178	197	0.71
Transmembrane Helix	198	218	0.79
Non-Cytoplasmic	219	300	0.75