YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38637528, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDIQLGCHT IRSHGTSVAR LHMYDWIILL FLAVVDGLLN IIEPFHRFVG RDMMTDLRYP  60
   61 LKGNTIPFWA VPLIAIVLPW VVFGGIYFKK KNVYDLHHGI LGILYSVLIT AVITDAIKDG 120
  121 VGRPRPDFFW RCFPDGIPKF DNVTTNVICH GEKSVIKEGH KSFPSGHSSW SFAGLGFLAW 180
  181 YLAGKLKAFD RKGHIAKLCI VFLPLLVASL VAVSRVDDYW HHWQDVFAGG IIGLTVSSFC 240
  241 YLQFFPYPFD ADAVWPHAYF QQLADTQSNG IANSYNMGPT DIEIADEGHG AISLRDTSPI 300
  301 LDTMESGRRG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.88
Non-Cytoplasmic	43	65	0.86
Transmembrane Helix	66	88	0.91
Cytoplasmic	89	95	0.86
Transmembrane Helix	96	117	0.88
Non-Cytoplasmic	118	165	0.94
Transmembrane Helix	166	184	0.90
Cytoplasmic	185	193	0.85
Transmembrane Helix	194	214	0.93
Non-Cytoplasmic	215	225	0.76
Transmembrane Helix	226	245	0.93
Cytoplasmic	246	310	0.96