YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPT2_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSAAAAFGL VRPCPARPPL QLGPGSSSCR PILLHARPLA AGIASSSRGP AAVAARSLGR  60
   61 LLLLPPPPPI SPDRAGRGRA RHVACGAAAG DAKAEEEESG LAKTLQLGAL FGLWYLFNIY 120
  121 FNIYNKQVLK VFPYPINITT VQFAVGTVVA LFMWITGILR RPKISGAQLF AILPLAVVHT 180
  181 MGNLFTNMSL GKVAVSFTHT IKAMEPFFSV LLSAIFLGEL PTVWVILSLL PIVGGVALAS 240
  241 LTEASFNWAG FWSAMASNVT FQSRNVLSKK LMVKKEESLD NINLFSIITV MSFFLLAPVA 300
  301 FLTEGIKITP TVLQSAGLNV KQVLTRSLLA ALCFHAYQQV SYMILARVSP VTHSVGNCVK 360
  361 RVVVIVTSVL FFRTPVSPIN SLGTAIALAG VFLYSQLKRL KPKPKAA

Type	Start	End	Confidence
Cytoplasmic	1	103	0.66
Transmembrane Helix	104	124	0.73
Non-Cytoplasmic	125	135	0.59
Transmembrane Helix	136	158	0.88
Cytoplasmic	159	165	0.57
Transmembrane Helix	166	186	0.82
Non-Cytoplasmic	187	197	0.44
Transmembrane Helix	198	218	0.59
Cytoplasmic	219	219	0.33
Transmembrane Helix	220	242	0.72
Non-Cytoplasmic	243	243	0.44
Transmembrane Helix	244	261	0.57
Cytoplasmic	262	281	0.59
Transmembrane Helix	282	302	0.92
Non-Cytoplasmic	303	375	0.73
Transmembrane Helix	376	397	0.85
Cytoplasmic	398	407	0.93