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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25990270
Protein type: Globular with Signal Peptide
Type Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKRKEVFGF RKSKVAKTLC GAVLGAALIA IADQQVLADE VTETNSTANV AVTTTGNPAT  60
   61 NLPEAQGEAT EAASQSQAQA GSKEGALPVE VSADDLNQAV TDAKAAGVNV VQDQTSDKGT 120
  121 ATTAAENAQK QAEIKSDYAK QAEEIKKTTE AYKKEVEAHQ AETDKINAEN KAAEDKYQED 180
  181 LKAHQAEVEK INTANATAKA EYEAKLAQYQ KDLAAVQKAN EDSQLDYQNK LSAYQAELAR 240
  241 VQKANAEAKE AYEKAVKENT AKNAALQAEN EAIKQRNETA KANYDAAMKQ YEADLAAIKK 300
  301 AKEDNDADYQ AKLAAYQAEL ARVQKANADA KAAYEKAVEE NTAKNTAIQA ENEAIKQRNA 360
  361 AAKATYEAAL KQYEADLAAA KKANEDSDAD YQAKLAAYQT ELARVQKANA DAKAAYEKAV 420
  421 EDNKAKNAAL QAENEEIKQR NAAAKTDYEA KLAKYEADLA KYKKELAEYP AKLKAYEDEQ 480
  481 AQIKAALVEL EKNKNQDGYL SKPSAQSLVY DSEPNAQLSL TTNGKMLKAS AVDEAFSHDT 540
  541 AQYSKKILQP DNLNVSYLQQ ADDVTSSMEL YGNFGDKAGW TTTVGNNTEV KFASVLLERG 600
  601 QSVTATYTNL EKSYYNGKKI SKAVFKYSLD SDSKFKNVDK AWLGVLPDPT LGVFASAYTG 660
  661 QEEKDTSIFI KNEFTFYDEN DQPINFDNAL LSVASLNREN NSIEMAKDYS GTFVKISGSS 720
  721 VGEKDGKIYA TETLNFKQGQ GGSRWTMYKN SQPGSGWDSS DAPNSWYGAG AISMSGPTNH 780
  781 VTVGAISATQ VVPSDPVMAV ATGKRPNIWY SLNGKIRAVN VPKITKEKPT PPVAPTEPQA 840
  841 PTYEVEKPLE PAPVAPTYEN EPTPPVKTPD QPEPSKPEEP TYETEKPLEP APVVPTYENE 900
  901 PTPPVKTPDQ PEPSKPEEPT YETEKPLEPA PVAPTYENEP TPPVKTPDQP EPSKPEEPTY 960
  961 DPLPTPPVAP TPKQLPTPPV VPTVHFHYSS LLAQPQINKE IKNEDGVDID RTLVAKQSIV1020
 1021 KFELKTEALT AGRPKTTSFV LVDPLPTGYK FDLDATKAAS TGFDTTYDEA SHTVTFKATD1080
 1081 ETLATYNADL TKPVETLHPT VVGRVLNDGA TYINNFTLTV NDAYGIKSNV VRVTTPGKPN1140
 1141 DPDNPNNNYI KPTKVNKNKE GLNIDGKEVL AGSTNYYELT WDLDQYKGDK SSKEAIQNGF1200
 1201 YYVDDYPEEA LDVRPDLVKV ADEKGNQVSG VSVQQYDSLE AAPKKVQDLL KKANITVKGA1260
 1261 FQLFSADNPE EFYKQYVSTG TSLVITDPMT VKSEFGKTGG KYENKAYQID FGNGYATEVV1320
 1321 VNNVPKITPK KDVTVSLDPT SENLDGQTVQ LYQTFNYRLI GGFIPQNHSE ELEDYSFVDD1380
 1381 YDQAGDQYTG NYKTFSSLNL TMKDGSVIKA GTDLTSQTTA ETDAANGIVT VRSKEDSLQK1440
 1441 ISLDSPFQAE TYLQMRRIAI GTFENTYVNT VNKVAYASNT VRTTTPIPRT PDKPTPIPTP1500
 1501 KPKDPDKPET PKEPKVPSPK VEDPSAPIPV SVGKELTTLP KTGTNDSSYM PYLGLAALVG1560
 1561 VLGLGQLKRK EDESN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle