YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30704771
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLGPTRPSRA ASPAPAIPCM ARATFDMNAA GLEARGGGHT EHGPLPFSVE SLLEAERVPG  60
   61 SESGELGVER PLGASKPGAW PPPVAHSCPP RAPSPPPCTL RKHKTNRKPR TPFTTAQLLA 120
  121 LERKFHQKQY LSIAERAEFS SSLSLTETQV KIWFQNRRAK AKRLQEAELE KLKLAAKPLL 180
  181 PAAFALPFPL GTQLHSSAAT FGGNAVPGIL AGPVAAYGMY YLS

Type	Start	End	Confidence
Cytoplasmic	1	173	0.60
Transmembrane Helix	174	191	0.32
Non-Cytoplasmic	192	197	0.56
Transmembrane Helix	198	221	0.67
Cytoplasmic	222	223	0.42