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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|34980829
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASTRYSIGGL SPFSEYAFRV LAVNSIGRGP PSEAVRARTG EQAPSSPPRR VQARMLSAST  60
   61 MLVQWEPPEE PNGLVRGYRV YYTPDSRRPL SAWHKHNTDA GLLTTVGSLL PGITYSLRVL 120
  121 AFTAVGDGPP SPTIQVKTQQ GVPAQPADFQ ANAESDTRIQ LSWLLPPQER IVKYELVYWA 180
  181 AEDEGQQHKV TFDPTSSYTL EDLKPDTLYH FQLAARSDLG VGVFTPTVEA RTAQSTPSAP 240
  241 PQKVTCVSTG STTVRVSWVP PPADSRNGII TQYSVAYEAV DGEDRKRHVV DGISREHSSW 300
  301 DLLGLEKWTE YRVWVRAHTD VGPGPESSPV LVRTDEDVPS GPPRKVEVEP LNSTAVHVSW 360
  361 KLPVPNKQHG QIRGYQVTYV RLENGEPRGQ PIIQDVMLAE AQETTISGLT PETTYSITVA 420
  421 AYTTKGDGAR SKPKVVTTTG AVPGRPTMMV STTAMHTALL QWHPPKELPG ELLGYRLQYR 480
  481 RADEARPNTI DFGKDDQHFT VTGLHKGATY VFRLAAKNRA GPGEEFEKEI TTPEDVPSGF 540
  541 PQNLRVTGLT TSTTELTWDP PVLAERNGHI TNYTVVYRDI NSQLELQNVT NDTHLTLLGL 600
  601 KPDTTYDIKV RAHTSKGAGP LSPSIQSRTM PVEQVFAKNF RVAAAMKTSV LLSWEVPDSY 660
  661 KSAVPFKILY NGQSVEVDGH SMRKLIADLQ PNTEYSFVLM NRGSSAGGLQ HLVSIRTAPD 720
  721 LLPQKPLPAS AFIEDGRFSL SMPQVQDPSL VRWFYIVVVP IDRVGGNLLA PRWNTPEELE 780
  781 LDELLEAIEQ GEEKQRRRRR QAERLKPYVA AQVDALPDTF TLGDKKSYRG FYNRPLSPDL 840
  841 SYQCFVLASL KEPMDQKRYA SSPYSDEIVV QVTPAQQQEE PEMLWVTGPV LAVILIILIV 900
  901 IAILLFKRKR THSPSSKDEQ SIGLKDSLLA HSSDPVEMRR LNYQTPGMRD HPPIPITDLA 960
  961 DNIERLKAND GLKFSQEYES IDPGQQFTWE NSNSEVNKPK NRYANVIAYD HSRVLLTSID1020
 1021 GVPGSDYINA NYIDGYRKQN AYIATQGPLP ETMGDFWRMV WEQRTATVVM MTRLEEKSRV1080
 1081 KCDQYWPVRG TETYGLIQVT LVDTVELATY TMRTFALHKS GSSEKRELRQ FQFMAWPDHG1140
 1141 VPEYPTPILA FLRRVKACNP LDAGPMVVHC SAGVGRTGCF IVIDAMLERM KHEKTVDIYG1200
 1201 HVTCMRSQRN YMVQTEDQYV FIHEALLEAA MCGHTEVLAR NLYAHIQKLG QVPPGESVTA1260
 1261 MELEFKLLAN SKAHTSRFVS ANLPCNKFKN RLVNIMPYEL TRVCLQPIRG VEGSDYINAS1320
 1321 FLDGYRQQKA YIATQGPLAE STEDFWRMLW EHNSTIIVML TKLREMGREK CHQYWPAERS1380
 1381 ARYQYFVVDP MAEYNMPQYI LREFKVTDAR DGQSRTIRQF QFTDWPEQGV PKTGEGFIDF1440
 1441 IGQVHKTKEQ FGQDGPITVH CSAGVGRTGV FITLSIVLER MRYEGVVDMF QTVKTLRTQR1500
 1501 PAMVQTEDQY QLCYRAALEY LGSFDHYAT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle