YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38637176, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLAFESNQ GLWNSGYYSQ LFGIGGVMVT VAILWLSTGY FGGIGAPFAP YFWPYLAQLP  60
   61 KKKERKRPVR VYMDGCFDLM HYGHANALRQ AKLLGDQLVV GVVSDEEIVA NKGPPVLSME 120
  121 ERLTLVSGLK WVDEVIPNAP YEITEEFMNT LFNKYNIDYI IHGDDPCLLP DGTDAYALAK 180
  181 KVGRYKQIKR TEGVSSTDIV GRILLTFKQK EAGSMEATTD ANVAVNQNTG ADTYDKVKSQ 240
  241 LSNFLPTSRR IMQFSNGQAP LPGARVVYID GAFDLFHAGH VEILRSARQL GDFLLVGVHD 300
  301 DQAIRDRRGY RPIMHLHERT LSVLACRYVD EVIIGAPWEV SRDMITTFNI SLVVHGTVTE 360
  361 GSSVVGIDPY AVPKSMGIFQ TITSPKPITT VSVATRIIDN HEAYKKRNLK KKASEDRYYT 420
  421 QKKFVSGD

Type	Start	End	Confidence
Cytoplasmic	1	15	0.63
Transmembrane Helix	16	36	0.79
Non-Cytoplasmic	37	37	0.26
Transmembrane Helix	38	57	0.54
Cytoplasmic	58	428	0.52