YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38637171, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAPLAGGR LVLVVVVAAA CMARWSEGIG VNWGTQLSHP LPASTVVQLL KDNGFDRVKL  60
   61 FDAEDGILAA LKGSGIQVMV GIPNDMLADL AAGAKAADDW VATNVSNHVN NGVDIRYVAV 120
  121 GNEPFLETFN GTYLNTTFPA MQSVQAALKK AGLADKVKVT VPLNADVYQS PTGKPSDGDF 180
  181 RADIHGLMLT IVQFLADTGA PFVANVYPFI SLYKDPNFPL DYAFFQGSSA PVVDGGVTYQ 240
  241 NTFDANHDTL VAALRRNGYP NVSIIVGEVG WPTDGDANAN PQYARQFNQG FLTHIASGQG 300
  301 TPLRPGPVDA YLFSLIDEDQ KSIEPGNFER HWGVFYYDGQ PKYPLSLRGG GNGNGNGSTL 360
  361 MPAKGVTYLQ RRWCVMKPSA SLVDQKVGDG VSYACGLADC TSLGYKTSCG GLDAKGNVSY 420
  421 AFNSYYQVND QDDRACDFKG IATTTTVDPS AGSCRFIIEI APTANGVAMA ATVRVAGVMA 480
  481 AILAVFIHLV VPVF

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	469	0.97
Transmembrane Helix	470	491	0.69
Cytoplasmic	492	494	0.64