YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113623138, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.93
Transmembrane Helix	20	40	0.91
Cytoplasmic	41	54	0.87
Transmembrane Helix	55	76	0.88
Non-Cytoplasmic	77	85	0.81
Transmembrane Helix	86	108	0.92
Cytoplasmic	109	118	0.77
Transmembrane Helix	119	140	0.89
Non-Cytoplasmic	141	156	0.88
Transmembrane Helix	157	176	0.94
Cytoplasmic	177	289	0.98
Transmembrane Helix	290	311	0.86
Non-Cytoplasmic	312	330	0.83
Transmembrane Helix	331	349	0.94
Cytoplasmic	350	364	0.77
Transmembrane Helix	365	384	0.92
Non-Cytoplasmic	385	400	0.83
Transmembrane Helix	401	423	0.84
Cytoplasmic	424	430	0.82
Transmembrane Helix	431	453	0.90
Non-Cytoplasmic	454	455	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWLSANLQV NPQVTVHGDW VSAVMPLMKL LCLTVIGLVL SNPRTQIIPK ATFKLLSKLV  60
   61 FALFLPCLIF VHLGQSVTIQ NILDWWFIPV NVLISTAIGC ILGYIVALIC RPPPQFFRFT 120
  121 VIMTGFGNTG NLPIAIIGSV CHTTDHPFGP GCHRKGVAYV SFAQWVAVIL VYTLVYHMME 180
  181 PPMQFYEIVG EGNEIVEEPA QISNYSRSLL HEAEWPGMAD KETEHSKTPF IARVFMSISG 240
  241 SSQNTFPDID FAEEGTSGAG PSSPKSLRCL AEPKVVRRIR VVAEKTPIQH VLQPPTIASL 300
  301 LAIVIGMVPL FKDFVFVPDA PLSFFTDSLE ILAQAVVPSV MLILGGMLAE GPKDNALGIR 360
  361 TITGIIVARL LILPCIGIGV VLLADRLHLL VEEDHMYRFV LSLQYSTPSA ILLGAIASLR 420
  421 GYAVKEASAL LFWQHICAVL SLSIYLIVYF RLLTI