YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50941559, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGIFACGSI SSAHGSCFRP ACLAVDDLRL FYKINSVTCG AYSWRWCVKK LHMRTNRRQM  60
   61 GTTVRTNARW LFGGDGRSSS NARMERSESA NEDILIFYFQ LDLQTRIQYA LNIEQFDVAK 120
  121 QLREKLTEIE TVIIRQREAK RGSSKTEAQD KAINLLRVRA DLQKAVDSEN YALAAALRDE 180
  181 IAKLETESLA VSAKALAYQN VKYAFRLGQK VRHKVHGYRA VICGMDHVCC ESKSWMETAN 240
  241 VENLSKGPNQ PFYQVLVDVY ADPELLVAYV AEENLAEAEI PEKGRFDHPY IEFLFFGEDT 300
  301 AGDFIPIKQL REKYDQPRYE ASGDEDDDDG STDS

Type	Start	End	Confidence
Signal Peptide	1	15	0.79
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	334	0.99