YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50933101, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPAEYYNS LPPISKAYGT LCFFATVLCQ LQILNPPFLA LYYPFVFKKF QIWRLFTSFF  60
   61 FLGKFSINFG IRLLMIARYG VQLEKGAFEK RTADFLWMMI FGAISLLALS AIPFLDIYFL 120
  121 GVPMVSMLLY VWSREYPNSQ ISMYGLVQLR SFYLPWAMLG LDVIFGSEIL PGLLGILVGH 180
  181 TYYFLSVLHP LATGKNYLKT PMRTLRSDPR PPTPDQAPSE EGATDSVNRS NLEDTLCCKP 240
  241 ATPIWEMQCR MKQVFKIHQT VPPPLFSSIV TGRHKQIPNL TFNSLFATSL LQRGQRPLAR 300
  301 RVTILYIEDW

Type	Start	End	Confidence
Cytoplasmic	1	16	0.91
Transmembrane Helix	17	34	0.91
Non-Cytoplasmic	35	54	0.72
Transmembrane Helix	55	76	0.89
Cytoplasmic	77	94	0.90
Transmembrane Helix	95	120	0.86
Non-Cytoplasmic	121	157	0.65
Transmembrane Helix	158	185	0.74
Cytoplasmic	186	310	0.84