YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49328025, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIDILTRV DSICKKYDKY DVERLNGANV AGEDPFARLY GSIDADINEC VEKAEAAKQE  60
   61 KNRATVVALN AEIRRTKAKL VEEDLPKLQR LALKKVKGLT KEELATRSDL VAALPDRIQS 120
  121 IPDGSSSAKK NGTWGASGSR TGGAIKFDTS DGNFDDEYFK GTEESNQFRR EYEMRKMKQD 180
  181 EGLDIIGEGL ETLKNMASDM NEELDRQVPL MDEMDEKVDR ANTDLKNTNV RLKETVLQLR 240
  241 SSRNFCIDIV LLCVILGIAA YLYNVLKKPD CAMDLFSTSS GDGWMSFDVS TSCSLYFYLI 300
  301 CVIVVWCSSG TCEHPC

Type	Start	End	Confidence
Cytoplasmic	1	244	0.74
Transmembrane Helix	245	265	0.91
Non-Cytoplasmic	266	286	0.71
Transmembrane Helix	287	308	0.79
Cytoplasmic	309	316	0.64