YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90399021, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.86
Transmembrane Helix	12	34	0.85
Non-Cytoplasmic	35	43	0.89
Transmembrane Helix	44	63	0.93
Cytoplasmic	64	72	0.89
Transmembrane Helix	73	95	0.90
Non-Cytoplasmic	96	102	0.85
Transmembrane Helix	103	124	0.93
Cytoplasmic	125	135	0.87
Transmembrane Helix	136	156	0.90
Non-Cytoplasmic	157	190	0.94
Transmembrane Helix	191	211	0.95
Cytoplasmic	212	220	0.87
Transmembrane Helix	221	243	0.91
Non-Cytoplasmic	244	259	0.87
Transmembrane Helix	260	280	0.94
Cytoplasmic	281	286	0.86
Transmembrane Helix	287	308	0.91
Non-Cytoplasmic	309	313	0.84
Transmembrane Helix	314	332	0.96
Cytoplasmic	333	412	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGEVVQGL KPVAAMVVVQ VVFAGVNIFY KLAVVCDGMD MRVLVAYRYL FASAVLAPLA  60
   61 YFVERKNRTK MTWRVLMLSF VCGLSGGSLA QNLYISGMKL TSATFATAMT NLIPAVTFVL 120
  121 AVLCRYERLA IRTVAGQAKV AGTLLGVGGA MLLTLYKGAE LNPWHTHLDL VAALEARHPA 180
  181 AAAATGNNDR VIMGSMLVVG SCVFYAVWLI LQAKLSREYP FHYTSTALMC VMSGAQSAAF 240
  241 ALLVDREPAR WRLGLDIRLL SVVYSGVLAS GVMLVVLSWC VKRRGPLFAS VFNPLMLVVV 300
  301 AVLGSLLLDE KMHVGTLLGA ALIVVGLYAV LWGKGRETAL EAAKVGDDND NHHIHVVVVV 360
  361 PPEQAQPQPH QQAEADADAT TTACEQPSDS DRANIASSLR HSHRYFHRSC GF