YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116310042, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPRGRKRA AAAAAVAEED SSKPEAAEAK KPAARGRGKR AKASPKPKPE TEYFPEKRNL  60
   61 EDLWLSAFPV GTEWENIDKI KEFNWNFENL EKALEEGGEL YGKTVYLFGS TEPQLLEVNG 120
  121 ESKIVLIPIV VAVDCPFPPS DKIGINSVQR ENEEIVPMKA MKMAWVPYVP LEDRLSRIDS 180
  181 LKTKIFTLGC TQRRSALRHL KTERVKLFDY CMPYYMPLNP PEDEDDTVVN IIYPLEPPIV 240
  241 CDFDWEMDDY EDFADEKVKD EVLPEDEKEK FKEFIKERVR ERKRELKQAK EARKKAIDDM 300
  301 DPKVKEAFEN IKFYKFYPVK TPDTPDVSNV KAKYINRYYR HAHHLM

Type	Start	End	Confidence
Signal Peptide	1	22	0.77
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	346	0.99