YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29840920
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLCKCERRR VTNLFCFEHR VNVCEFCLVA NHNKCIVKSY LRWIKDSDFN PSCSLCHELF  60
   61 ETDPTKKCVR LVCLDVFHWD CLNNYVLSLP PTTTPAGFLC PLCDQPIIPQ ANHGGPVAEA 120
  121 LRTCLSEVSW AKESLTQIRP FFPLESYSKS VVTPNANATS PNPINGKLLD PRLDIAARQF 180
  181 LKGRDVTDIL ESPQMTTGCQ IDNNSRDTNM YADISQVHYQ RRDQPLSSTS NLFASEYDDN 240
  241 DKYKRSLTLT WFKRFLRRHS SHFFCLSVIR RNRLVALIMT CIICIFLLGF YGSQPKDITG 300
  301 DPLLDPHMNP NIHFNLEPID SMKAVLDNPN NDGLNDA

Type	Start	End	Confidence
Cytoplasmic	1	273	0.75
Transmembrane Helix	274	293	0.90
Non-Cytoplasmic	294	337	0.79