YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114623876, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.98
Transmembrane Helix	36	58	0.89
Non-Cytoplasmic	59	133	0.95
Transmembrane Helix	134	158	0.83
Cytoplasmic	159	173	0.81
Transmembrane Helix	174	198	0.83
Non-Cytoplasmic	199	204	0.74
Transmembrane Helix	205	226	0.93
Cytoplasmic	227	237	0.82
Transmembrane Helix	238	257	0.87
Non-Cytoplasmic	258	260	0.62
Transmembrane Helix	261	284	0.71
Cytoplasmic	285	480	0.79
Transmembrane Helix	481	504	0.88
Non-Cytoplasmic	505	516	0.78
Transmembrane Helix	517	539	0.85
Cytoplasmic	540	550	0.69
Transmembrane Helix	551	570	0.84
Non-Cytoplasmic	571	584	0.66
Transmembrane Helix	585	606	0.92
Cytoplasmic	607	613	0.79
Transmembrane Helix	614	633	0.95
Non-Cytoplasmic	634	644	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLQQSTTIT SLEKWCLDES LSGCRRHYNV KKKLKLIRVL GLFMGLVAIS TVSFSISAFS  60
   61 ETDTQSTGEA SVVSGPRVAQ GYHQRTLLDL NDKILDYTPQ PPLSKEGESE NSTDHAQGDY 120
  121 PKDIFSLEER RKGAIILHVI GMIYMFIALA IVCDEFFVPS LTVITEKLGI SDDVAGATFM 180
  181 AAGGSAPELF TSLIGVFIAH SNVGIGTIVG SAVFNILFVI GMCALFSREI LNLTWWPLFR 240
  241 DVSFYIVDLI MLIIFFLDNV IMWWESLLLL TAYFCYVVFM KFNVQVEKWV KQMINRNKVV 300
  301 KVTAPEAQAK PSAARDKDEP TLPAKPRLQR GGSSASLHNS LMRNSIFQLM IHTLDPLAEG 360
  361 RFREKASILH KIAKKKCHVD ENERQNGAAN HVEKIELPNS TSTDVEMTPS SDASEPVQNG 420
  421 NLSHNIEGAE AQTADEEEDQ PLSLAWPSET RKQVTFLIVL PIVFPLWITL PDVRKPSSRK 480
  481 FFPITFFGSI TWIAVFSYLM VWWAHQVGET IGISEEIMGL TILAAGTSIP DLITSVIVAR 540
  541 KGLGDMAVSS SVGSNIFDIT VGLPLPWLLY TVIHRFQPVA VSSNGLFCAI VLLFIMLLFV 600
  601 ILSIALCKWR MNKILGFIMF GLYFVFLVVS VLLEDRILTC PVSI