YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24308633, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKGENDAR APLLAERRRN SVGSMRGEFV SRLPKKVLDA VDPERPSHVD FSRSKGLREG  60
   61 EPGLPLFHSL FPPPEQYFFS GPGQREKEYY EKQFATLRSF EEVDSIEESN VMSEEDDIAE 120
  121 QKQSEFAMKI SNYANMILLA LKIYATIKSG SIAIAASTLD SLLDLMAGGI LWFTHLSMKS 180
  181 INVYKYPIGK LRVQPVGIII FAAVMATLGF QVFVQAVEKL IVNETPDKLT PVQLTWLYSI 240
  241 MIFATVVKLA LWLYCRTSGN KIVRAYAKDH YFDVVTNVVG LAAAVLGDMF YWWIDPVGAI 300
  301 ALAVYTITNW SGTVWENAVS LVGESAPPEM LQKLTYLAIR HHPQIKRVDT VRAYTFGVLY 360
  361 FVEVDIELPE ELPLKEAHAI GESLQIKIEE LPEVERAFVH LDFECDHKPE HNILSKLPSS 420
  421 QP

Type	Start	End	Confidence
Cytoplasmic	1	130	0.86
Transmembrane Helix	131	147	0.65
Non-Cytoplasmic	148	151	0.51
Transmembrane Helix	152	176	0.75
Cytoplasmic	177	194	0.75
Transmembrane Helix	195	214	0.94
Non-Cytoplasmic	215	233	0.87
Transmembrane Helix	234	255	0.91
Cytoplasmic	256	270	0.88
Transmembrane Helix	271	292	0.77
Non-Cytoplasmic	293	298	0.54
Transmembrane Helix	299	315	0.64
Cytoplasmic	316	422	0.75