YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115451317, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	150	0.79
Transmembrane Helix	151	168	0.79
Non-Cytoplasmic	169	182	0.63
Transmembrane Helix	183	201	0.81
Cytoplasmic	202	208	0.59
Transmembrane Helix	209	231	0.82
Non-Cytoplasmic	232	259	0.91
Transmembrane Helix	260	282	0.87
Cytoplasmic	283	288	0.89
Transmembrane Helix	289	310	0.95
Non-Cytoplasmic	311	346	0.92
Transmembrane Helix	347	369	0.89
Cytoplasmic	370	382	0.88
Transmembrane Helix	383	402	0.90
Non-Cytoplasmic	403	411	0.68
Transmembrane Helix	412	435	0.82
Cytoplasmic	436	444	0.65
Transmembrane Helix	445	464	0.91
Non-Cytoplasmic	465	478	0.72
Transmembrane Helix	479	503	0.85
Cytoplasmic	504	662	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRAVSDGGE AIDADIASRT SSHSHMDGGH HHHHHGHKVE FPPKKKLIDE FTDAVKETFF  60
   61 ADDPLRQYKD QPMSKKVLIS LQNFFPVLDW GRHYTFRKFR GDLVSGLTIA SLCIPQDIGY 120
  121 AKLAGLLPNY GLYSSFVPPL IYAMMGSSRD IAIGPVAVVS LLLGTLLQNE FDPKKNQEEY 180
  181 TRLAFTATFF AGVTQAALGF LRLGFIIEFL SHAAIVGFMA GAAITIALQQ LKGFLGIANF 240
  241 TKKTDIISVM KSVWGNVHHG WNWQTILIGA SFLAFLLVAK YIAKKNKKLF WVAAIAPLTS 300
  301 VIISTLFVYI TRADKHGVVI VKYIKKGINP PSASLIYFSG PNLMKGFRIG VIAGMIGLTE 360
  361 AIAIGRTFAG LKDYKIDGNK EMVALGTMNI VGSMTSCYVA TGSFSRSAVN YMAGCQTAVS 420
  421 NIVMSIVVLL TLELITPLFK YTPNAILSSI IISAVLGLVD YHTAYLIWKV DKLDFLACLG 480
  481 AFFGVIFSSV EYGLLIAVAI SLAKILLQVT RPRTVLLGNL PRTTLYRNID QYPEATLVPG 540
  541 VVIVRVDSAI YFTNSNYVKD RILRWLRDEE ERQQEQKLQK TEFLIVELSP VIDIDTSGIH 600
  601 ALEDLFRALE KRKIQLILAN PGPAVILKLR SAKFTDLIGE DKIFLTVGDA VKKFAPKAVE 660
  661 NV