YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125588126, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVQEFTVDL NKPLVFQVGH LEERYQEWVH QPIVSKEGPR FFGNDVLEFL TRTKWFAVPT  60
   61 IWLPVVCWLL VKSIRMGHTI QEVGLMALFG IFIWTLIEYT LHRFLFHIET KTYWANTAHY 120
  121 LLHGCHHKHP MDSLRLVFPP TATAILCVPF WKLVAFFATP TITPALFGGG LLGYVMYDCT 180
  181 HYYLHHGQPS KEPAKNLKRY HLNHHFRIQN KGFGITSSLW DYVFGTLPPS KTTGKNN

Type	Start	End	Confidence
Cytoplasmic	1	54	0.76
Transmembrane Helix	55	74	0.76
Non-Cytoplasmic	75	82	0.45
Transmembrane Helix	83	102	0.87
Cytoplasmic	103	135	0.62
Transmembrane Helix	136	155	0.64
Non-Cytoplasmic	156	160	0.44
Transmembrane Helix	161	181	0.67
Cytoplasmic	182	237	0.71