YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|215737360, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPRLFSSG SGTRDDRTDA SGRRLYNPYQ DLNIPYKQLY DLPTSPEFLF QEESLAQRRS  60
   61 WGENLTYYTG IGYLSGAVAG AAVGLRDAAR NAEPGDTAKI RANRVLNSCG SNGRRMGNTL 120
  121 GVIGLLYAGI ESGMVAVRDR DDWINSVTAG LGTGALFRAA NGPRSAAVAG AIGGVLAGAA 180
  181 MAGKQAAKRY VPAL

Type	Start	End	Confidence
Cytoplasmic	1	64	0.82
Transmembrane Helix	65	85	0.52
Non-Cytoplasmic	86	164	0.49
Transmembrane Helix	165	183	0.85
Cytoplasmic	184	194	0.66