YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34902374, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCGIDKDST GRVPPFRFAS PKPQAHPHQP KNHNLPLSSP LLAAGAAAAA VTAAFSLSSL  60
   61 SFSPPRGETI VLQPYQLFIW FQFNFIVNSQ ALKSYIWLQC FDGSIQQVEE EVAMFCPMIC 120
  121 REIVKNGTGS SKNHAIALPE RVNPTSLSLI LDYCRFHQVP GRSNKERKSF DEKFVRIDTE 180
  181 RLCELTSAAD SLQLKPLVDL TSRALARIIE GKTPEEIRDI FHLPDDLTEE EKLEPLKNIN 240
  241 DDPRIRLLNR LYAKKRKELQ ERQKLKDVQV QEEQKDERSL DEILCFINGD GGSGGGKASK 300
  301 NKKKNKRRKD HSKNPPKANP EPVNKEEATR GVPFNAGTGN ISRTPCQSSD VQDDVEYPFE 360
  361 DADLDDGLDP AMQEELDREV EDFARRLNSV WPERMHLGQE RRIESHMIGG NGSLQRFSGF 420
  421 NHR

Type	Start	End	Confidence
Cytoplasmic	1	36	0.79
Transmembrane Helix	37	57	0.81
Non-Cytoplasmic	58	423	0.93