YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24431595, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVPSAPAPD AHRRGVFLLS VGAGGGGAGT AVVEVEVEHP HSLSLSPPPM SSCGRYILHR  60
   61 VCRFDTLAGV AIKYGVEVAD VKRVNGLTTD LQMFAHKTLR IPLPVLNTDL TPSVHSVKLS 120
  121 TVAPSMDLLQ NYYGLARPPK GDPENEGTEM ATYSIGQHTK ARSLSTGFSL VNGEVDDAEK 180
  181 PIRRRQKSDA EFSTREGNSG GVLMKAGPGL ALRPKSGSRP EINNSQQDLV ATAVPSYGDG 240
  241 LQAVRKSSST PEFQDSDNSI ASVWLKSKWN LKPDAFTLPL PILLLDSIPK PIFDTFPKQI 300
  301 AAWRNKAARD

Type	Start	End	Confidence
Signal Peptide	1	30	0.48
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	310	0.98