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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47848191, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRSCSRQKT VCYTTAVMNA AQATIVVGSQ VWVEDPGVAW IDGEVIKVHG DTVIVKCSNE  60
   61 KTVTVKGSNV HAKDPEESPC GVDDMTKLAY LHEPGVLQNL KSRYDMNEIY TYTGNILIAV 120
  121 NPFRRLPHLY DTQMMEQYKG ADFGELSPHP FAVADVAYRL MLNEGISQSI LVSGESGAGK 180
  181 TESTKMIMRY LAYMGGKAAA EGRTVEKQVL QSNPVLEAFG NAKTVRNNNS SRFGKFVEIQ 240
  241 FDQNGRISGA AVRTYLLERS RVCQISDPER NYHCFYMLCA APPEELKRYK LGDPRTFHYL 300
  301 NQSNCYKLEG LDESKEYLET RKAMDIIGIS SEEQEAIFRV VAAILHLGNV EFAEGDDGES 360
  361 SKPKDEKSLF HLKTAAELFM CDEKALEDSL CKRIIVTRDE NIVKTLDPEA AKGSRDALAK 420
  421 TVYSRLFDWL VDKINKSIGQ DPNSKCLIGV LDIYGFESFK TNSFEQFCIN LTNEKLQQHF 480
  481 NQHVFKMEQE EYTKEEINWS YIEFIDNQDV LDLIEKKPGG IIALLDEACM LPRSTHETFA 540
  541 QKLYQTFKNN KRFTKPKLSR SDFTICHYAG DVTYQTELFL DKNKDYVVAE HQALLSASQC 600
  601 SFVSGLFPLL SEDSSKSSKF SSIGSRFKQQ LQSLLETLSA TEPHYIRCVK PNNILKPSIF 660
  661 ENQNVLQQLR CGGVMEAIRI SCAGYPTRRT FYEFIDRFGI LAPDVLSGSS DEIAAVRRLL 720
  721 EKVDLQGYQI GKTKVFLRAG QMAELDARRN EVLGRSANMI QRKVRSFLAQ KNFIKLQRSA 780
  781 VQLQTICRGE LARKIYQNLR REAASLRIQT CYRMHAARKA YNELSASAVT IQSALRGMVA 840
  841 RKELHFRQQT KAAIVIQSRC RQFLARLYYS RTKKAAITTQ CAWRGKVARK ELRKLKMAAR 900
  901 ETGALQAAKN KLEKQVEELT WRLQLEKRMR ADLEEAKSQE NAKLQATLQE VQQQYKETQE 960
  961 MLVKEREAAK KAAEVAPVVK EVPVIDTELM NKLRDENDKL KTLVSSLEKK IDDTEKKYEE1020
 1021 TNKISEERLQ KAMDAETKIV DLNMAMLRLQ EKLSNMESEE KVQRQALLSS PVKSMSEHLS1080
 1081 IPIVPKNLEN GFHEVEDPKE PQSAPPAIKD YGNGDPKLRK SCVDRQLENV DALIDCVSKN1140
 1141 LGYCGGKPVA AFTIYKCLLH WKSFEAEKTS VFDRLIQLIG SAIENEEDND NLAYWLSNTS1200
 1201 SLLFLLQRSL KAAGAPGSVS RKKPPQPTSL FGRMAQGLRS ASFVNMHVEA TDVVRQVEAK1260
 1261 YPALLFKQQL TAYVEKIYGI IRDNIKKELS SLISLCIQAP RTMKASMLRM SGRLSGQAQS1320
 1321 NHWQRIIESL DILLKKLQDN HVPPVLAQKV FTQIFSYINV QLFNSLLLRR ECCSFSNGEY1380
 1381 VKAGLAELEL WCAKATTEYA AASWDELKHI RQAVGFLVIF QKFRISYDEI VNDLCPILSV1440
 1441 QQLYRICTQY WDDKYNTQSV SSDVLSNMRV LMTEDSNNAE SSSFLLDDNS SIPFSVDDIT1500
 1501 NSIQEKDFTD VKPAEELLEN PAFQFLQD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle