YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20372917
Protein type:	Globular with Signal Peptide
Type Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSPCDLRI LLVAAAAAFI YIQVRLFSTQ SHYADRLAQA EKSENQCTSQ LRSLIDQVSS  60
   61 QQEKIVALEE MKIRQDEERV HLKILIQDLE KRSVQTLVNN NVAPVAAVVV MACNRPDYLQ 120
  121 RTVESILKYQ TSVASKFPLF ISQDGINGEV KKKALSYNEI TYMQHLDLEP VRTERPGELI 180
  181 AYYKIAKHYK WALDELFIKH NFARVIILED DMEIAPDFFD YFEAAAKLLD NDKTIMAVSS 240
  241 WNDNGQKQFV YDPKALYRSD FFPGLGWMLT KPTWIELSPK WPKAYWDDWV RLKEVHRDRQ 300
  301 FIRPEVCRTY NFGEHGSSMG QFFRQYLEPI KLNDAHIKWN SEDLSYLKED KFLIQFGKDV 360
  361 ASATPLHGSD AALKAHNMDA DVRIQYNDQE DFERIARQFG IFEEWKDGIP RTAYKGVVVF 420
  421 RYKSSRRRIY LVGPDSLSQL RV

Type	Start	End	Confidence
Signal Peptide	1	26	0.60
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	442	0.99