YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125541688
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGRESTVAS GSNFSSFYVQ HRGIGVPGGS GHPAGLHGPP PGGYRQHLDA VSAGYPFQPP  60
   61 HIGGSHIGQG YHHVDASAPV AQHGSGGGGG GMDIGMGVEM SADAKGDQGS GAGQDEPVKK 120
  121 KRGRPRKYKP DGAVTLGLSP SSSTPHSSTS AMGTMVTTPG SGFGSGAGSG GSGSGALTEK 180
  181 RGRGRPPGSG KMQQLASLGK WFLGSVGTGF TPHVIIISPG EDVAARIMSF SQQGPRAVCI 240
  241 ISATGAVSTA TLHQDSNSGG VVTYEGRFEI LCLSGSYLVI EEGGSRTRSG GLCIALCGPD 300
  301 HRVIGGSVGG VLTAAGTVQV IVGSFMYGGT KKNKAKAEQE TENNEEPIGG EEETPTMALP 360
  361 DHNMPHHTMG GWSAGLMRQM DSRTPNIDIN SIRE

Type	Start	End	Confidence
Non-Cytoplasmic	1	155	0.54
Transmembrane Helix	156	177	0.40
Cytoplasmic	178	197	0.50
Transmembrane Helix	198	217	0.56
Non-Cytoplasmic	218	307	0.79
Transmembrane Helix	308	328	0.56
Cytoplasmic	329	394	0.64