YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTP3_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGDDRRTPL LGGEGGSTRP PSLRRRDSAR SLRSTFLSRL PDKVRGGGDP ERPAADVDLT  60
   61 RAKGLSQGEK EYYEKQLATL KIFEEVEALC MPGEFESDAE VLELEDKEQK QSESAMKISN 120
  121 YANIILLVFK VYATIKTGSM AIAASTLDSL LDFLAGGILY FTHLTMKSVN IYKYPIGKLR 180
  181 VQPVGIIVFA AIMATLGFQV LIQAIEQLVE NKAGEKMTPE QLIWLYSIML SATVVKLALY 240
  241 IYCRSSGNSI VQAYAKDHYF DVVTNVVGLV AAVLGDKFFW WIDPVGAVLL AVYTIVNWSG 300
  301 TVYENAVTLV GQCAPSDMLQ KLTYLAMKHD PRVRRVDTVR AYSFGALYFV EVDIELSEDM 360
  361 RLGEAHSIGE SLQDKIEKLP EVERAFVHVD FESTHKPEHR VRSRLPSTEP

Type	Start	End	Confidence
Cytoplasmic	1	120	0.92
Transmembrane Helix	121	135	0.51
Non-Cytoplasmic	136	139	0.32
Transmembrane Helix	140	164	0.70
Cytoplasmic	165	180	0.48
Transmembrane Helix	181	205	0.83
Non-Cytoplasmic	206	221	0.57
Transmembrane Helix	222	243	0.89
Cytoplasmic	244	258	0.52
Transmembrane Helix	259	275	0.39
Non-Cytoplasmic	276	278	0.47
Transmembrane Helix	279	300	0.48
Cytoplasmic	301	410	0.68