YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50913119, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAGEYGGG GGGGGGFGGD FMVLRPDKGG IGDLFHLLWS CKVAENAAVD CPIGTEIAER  60
   61 RRRWALFVSL VAQMLLLWTK KPMALLGGGT EYWMNLLNEN GGSVFMLITN ALQGKVKMPD 120
  121 KSSINYRSCI GLLDTRIDLD EKIKPEDRNY HAALSIMAAK LAYENELVVR TVVQNHWQMN 180
  181 FVGFYNCWNE FQEDYTTQAF MVSDKAEDAS LAVVAFCGTK PFDTEQWCAD VDFSWYEIPG 240
  241 VGKVHGGFMK ALGLQRNGGW PEQPTGAGDD GGSDKKPFAY YVIRERLRAF LAENPRARFV 300
  301 VAGHSLGGAL AILFPTVLAL HGEEDMLARL HGVYTFGQPR VGDEGLCRFM DGHLATPVSR 360
  361 YFRFVYCNDI VPRVPYDDTA LLFKHFGTCL YFDSFYKGHV TEEEPNKNYF SLLTVVPKYA 420
  421 NAAWELARSF VIGYVDGPEY GEGWLMRIAR AAGLLLPGLP PHAPQDYVNA TRLGAASLEP 480
  481 LR

Type	Start	End	Confidence
Cytoplasmic	1	63	0.54
Transmembrane Helix	64	79	0.43
Non-Cytoplasmic	80	482	0.63