YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113537695, gi...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSCEARRAH AVLIPQPAQG HVTPMLHLAK ALHARGFFVT YVNSEYNHRR LLRSSGPGAL  60
   61 AGAAGFRFEA VPDGMPESGN DDVTQDIAAL CVSTTRHSAE PFRELLVRLN STPGTPPVSC 120
  121 VIADGVMSFA QRVAEEMGIL ALVFWTTSAC GFMGYLHFAE LIRRGYVPLK DESDLTNGYL 180
  181 DTPIDWIPGM RGIRLKDVPS FIRTTDPDDV MLNFDGGEAQ NARKARGLIL NTYDALEQDV 240
  241 VDALRREFPR VYTVGPLPAF AKAAAGEVGA IGGNLWKEDT GCLRWLDAQQ PGSVVYVNFG 300
  301 SITVMSPAHL AEFAWGLACC GRPFLWVIRP DLVSGEKAML PEEFVGETKE RGVLASWCPQ 360
  361 ELVLSHPSVG LFLTHCGWNS TLESICAGVP MICWPFFAEQ PTNCRYVCDK WGVGMEIDSN 420
  421 VSRTEVARLV REAMEGERGK AMRVNAMVWK EKAKEATEEG GSSSRNLDRL IEFLHSSGSD 480
  481 AR

Type	Start	End	Confidence
Cytoplasmic	1	136	0.66
Transmembrane Helix	137	159	0.72
Non-Cytoplasmic	160	482	0.82