YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APRL3_ORYSJ
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRLLCWTA LLLPIIAATA AASPLPEACP VPTAAEEILG PGGTCTTLDR RGDPVGVIEG  60
   61 DEVTLAKAIT LLHMNKDDYI AVLFYASWCP FSQECKPNFE ILASLFPSIR HFAFEESSIR 120
  121 PSIISRYGIH GFPTLFLLNS TMRVRYHGPR TVKSLAAFYR DVSGFDVSMT SEAVLHSVDG 180
  181 IELKKDAEQE NCPFWWARSP EKILQQDTYL ALATAFVILR LLYLLFPKIG SFAKRAWRRH 240
  241 TLFPNLVGVH EYFFTYLEQA RHKFFRLYPS KRGNLQEGAR NATAWASKSL ASVSIGEPST 300
  301 IGRTNSTNEL R

Type	Start	End	Confidence
Signal Peptide	1	22	0.96
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	208	0.99
Transmembrane Helix	209	230	0.73
Cytoplasmic	231	311	0.73