YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46390620, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAAVAASLR SLAPLSAYRS PSHGIHAVVR DSSAYTTRPP PPPPTADGGG NGGRISPAVL  60
   61 FIIVILAVIF FISGLLHLLV RLLMKKQHRR GGAENAAPSP HSRHVGRDAA MDRQLQQLFH 120
  121 LHDSGLDQAF IDALPVFAYR DIVGGDKEPF DCAVCLCEFD GEDRLRLLPV CGHAFHLHCI 180
  181 DTWLLSNSTC PLCRGTLYVP GLTIESLMFD FDERLEEGRL SEECEDGFQS SRQKKPMDEE 240
  241 QTVTEKRVFP VRLGKFKNVG NTGVGGVDNG NAAGIVSREP GESSSSSLDT RRCFSMGTYQ 300
  301 YVLGASELRV ALQPGRNKNG VGSRLKGRAT GISSVNAEIM EGKRICAKSK GESFSMSKIW 360
  361 QWSNVKGKLP AGSDNCSETA SFPWMKRDAT GDKSNM

Type	Start	End	Confidence
Non-Cytoplasmic	1	57	0.66
Transmembrane Helix	58	80	0.95
Cytoplasmic	81	396	0.74