YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218191553
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.59
Transmembrane Helix	49	68	0.89
Cytoplasmic	69	78	0.55
Transmembrane Helix	79	99	0.83
Non-Cytoplasmic	100	104	0.58
Transmembrane Helix	105	127	0.86
Cytoplasmic	128	141	0.65
Transmembrane Helix	142	163	0.87
Non-Cytoplasmic	164	168	0.60
Transmembrane Helix	169	191	0.83
Cytoplasmic	192	199	0.58
Transmembrane Helix	200	220	0.89
Non-Cytoplasmic	221	228	0.56
Transmembrane Helix	229	251	0.85
Cytoplasmic	252	293	0.55
Transmembrane Helix	294	316	0.82
Non-Cytoplasmic	317	332	0.46
Transmembrane Helix	333	351	0.49
Cytoplasmic	352	371	0.78
Transmembrane Helix	372	392	0.91
Non-Cytoplasmic	393	400	0.72
Transmembrane Helix	401	423	0.92
Cytoplasmic	424	431	0.75
Transmembrane Helix	432	449	0.90
Non-Cytoplasmic	450	469	0.87
Transmembrane Helix	470	489	0.85
Cytoplasmic	490	538	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGGGGGG AAPAPKHDEL TPHPVKDQLP GVSYCITSPP PWPEAILLGF QHYLVMLGTT  60
   61 VIIPTALVPQ MGGNNEDKAV VIQTLLFVAG INTLLQSFFG TRLPAVIGGS YTFVVPTISI 120
  121 ILAGRYANEP NPHTKFLRIM RGTQGALIVA SALQIIFGFS GLWRNVARYL SPLSAAPLVM 180
  181 LVGFGLYELG FPSVAKCVEI GLPELILLVI FAMYLPHAIH MMKSIFDRFA VLFTIPIVWL 240
  241 YAYLLTVGGA YRNAPPKTQF HCRTDRSGII GGAPWIRVPY PFQWGAPTFD AGEAFAMMAA 300
  301 SFVALVESTG AFIAVSRYAS ATPLPPSVLS RGIGWQGIGI LLDGLFGTGN GSSVSVENAG 360
  361 LLALTRVGSR RVVQISAGFM IFFSILGKFG AVFASIPPPI FAALYCIFFA YVGSAGVGFL 420
  421 QFCNLNSFRT KFILGFSVFM GLSVPQYFNE YTSVAGYGPV HTHSRWFNDI VNVIFSSKAF 480
  481 VAGFVAYLLD NTIHRHDSSV RKDRGHHWWD KFRSYRTDTR SEEFYSLPFN LNKFFPSV