YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42408030, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLSENEGIE GVRFAVTGGQ GFVGSALCLE LLRRGAREVR SLDLRASSPW SDQLLGAGVR  60
   61 FFQGDVRKKE DVGKALRGVD CVFHLASYGM SGKEMVQAGR ADEVNINGTC NVLDACHEHG 120
  121 VRRLVYVSTY NVVFGGEPIV NGNEALPYFP VEDHVDAYAR SKSIAEQLVL KSNGRQTKSD 180
  181 KSSRLYTCSI RPAAIYGPGE ERHLPRILSL AKLGLAFFKI GDPNVKSDWV YVDNLVLALI 240
  241 LASMGLLDDI PDRKGIPVAA GQAYFICDGS PVNTFEFLSP LFQSLDYTVP RVRMDTSVAL 300
  301 AISRFFVFMY TLLYPWLDSK WIPQPLLLPA EVYKVGVTHY FSYLKAREEI GYVPMVSPRE 360
  361 GLAATISYWQ ERKRKELDGP TIFPWLFVTI GMLALFSAAY LPPVGPLKWV LDLHLFVFRS 420
  421 KLVIRLVFVI ATALHVGEAV YAWFLAKKYD PRNATGWFWQ TFMLGFFSLR YLLKRMRE

Type	Start	End	Confidence
Cytoplasmic	1	297	0.64
Transmembrane Helix	298	317	0.64
Non-Cytoplasmic	318	381	0.88
Transmembrane Helix	382	404	0.86
Cytoplasmic	405	421	0.77
Transmembrane Helix	422	445	0.89
Non-Cytoplasmic	446	454	0.81
Transmembrane Helix	455	473	0.94
Cytoplasmic	474	478	0.86