YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125541004
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTLPVTMPP PQSPELRSLR STLDQRGELR APLLSFDWGF PGGIARWEGE EGRLRRAAGA  60
   61 ARAAATEMWA FARKDPRKPV FAAKVATALA LITLLVFLRE PTDLANHAVW AILTVVVVFE 120
  121 FSIGATLSKG LNRGLGTLTA GGFALAVSEL SSSMGNFGNV ILIICTFVVA FGATLTKLHP 180
  181 KMKPYEYGFR VFLLTFCYVT VSGYNTGKFI ATAISRFLLI AIGAAVSLAL NIGIHPIWAG 240
  241 EDLHNLVAKN FDGVAKSLEG CVDGYLKCME YERVPSTILT YQASDDDHLY SGCRAAVESS 300
  301 AQEEALLGFA IWEPPHGPYK MMKYPWMNYT KVGGALRHCS FSVMALHGCI LSEIQAPPES 360
  361 RQVFSAELHR VGQEGAKVLR ELGHRVKTMT RLSSQNILSE VHFAAEQLQK KIDQKSYLLV 420
  421 NTEKWQALIR RHGGGAKDGG LVPGRRAIAS PGAVHKSSSF ASSTSHSSLN SAPRTDASYK 480
  481 PQPPWPIRQP SFHPSLPFEA AAAEARTYES ASALSLATFA SLLIEFVARL RSLVDAFEEL 540
  541 SESANFKEDP VEEPSAISRE NGGVLYRLRR FFGLEELRQR AGEP

Type	Start	End	Confidence
Cytoplasmic	1	79	0.98
Transmembrane Helix	80	98	0.97
Non-Cytoplasmic	99	106	0.77
Transmembrane Helix	107	127	0.90
Cytoplasmic	128	133	0.73
Transmembrane Helix	134	152	0.80
Non-Cytoplasmic	153	156	0.70
Transmembrane Helix	157	178	0.88
Cytoplasmic	179	186	0.80
Transmembrane Helix	187	207	0.81
Non-Cytoplasmic	208	213	0.57
Transmembrane Helix	214	239	0.81
Cytoplasmic	240	333	0.78
Transmembrane Helix	334	351	0.42
Non-Cytoplasmic	352	584	0.63