YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41052799, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.65
Transmembrane Helix	7	30	0.82
Non-Cytoplasmic	31	60	0.63
Transmembrane Helix	61	78	0.63
Cytoplasmic	79	87	0.38
Transmembrane Helix	88	109	0.90
Non-Cytoplasmic	110	150	0.42
Transmembrane Helix	151	176	0.69
Cytoplasmic	177	184	0.50
Transmembrane Helix	185	211	0.78
Non-Cytoplasmic	212	254	0.63
Transmembrane Helix	255	276	0.89
Cytoplasmic	277	288	0.54
Transmembrane Helix	289	310	0.59
Non-Cytoplasmic	311	315	0.80
Transmembrane Helix	316	337	0.91
Cytoplasmic	338	343	0.84
Transmembrane Helix	344	364	0.76
Non-Cytoplasmic	365	384	0.65
Transmembrane Helix	385	408	0.85
Cytoplasmic	409	416	0.65
Transmembrane Helix	417	434	0.65
Non-Cytoplasmic	435	453	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRNFWSMA AAAVGFRLVL VLFGGDLHLA SRPEVSTPLT SIRRLAEGYW LKQASMSPYS  60
   61 GSMYHGSPLL LLVLGPLTNK RSVGHHDHIY CSLIFVAVDF IAAMLIRATG RRLQIARNRN 120
  121 LKSLELTEAV SNSVNVSAGD IASLIYLWNP WAIVTCVGSC TSPIENLMVV IMIYGACSRL 180
  181 APLAAFGYVM ATHLSLYPAI LIVPIILLLG YGPDAPPTKV FRIKSSSASK TDVSDNDKSS 240
  241 SSRDVQQFLW KPVFHFILWM LFWTFYVLLL SSIVLNKVGG LQEMFEKTYG FILTVKDLSP 300
  301 NIGVLWYFFA EVFDFFRSFF LIVFNMNIVF MVLPLAIRLK HRPCFLAFIY TAIVAILKSY 360
  361 PSVGDSALYL GLLGLFANEL AEMQFTFFLF FGYIGVSLLS PVMHNLWIWR GTGNANFYFA 420
  421 TGLAYTCLQT VLVVESVSSM IKHDRKLRLL VTA