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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47497946, gi|...
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRAVIRRR KYLLDHVNAP TLSLSPFSTF QHGRSGSEDE SRIGQRFLEQ SSGDSKWEQG  60
   61 QYGVKLIKGD LLALGNGLLR RPAHGISLPA YGIGRKEFGL PMGARHLLQS VRTASTATAG 120
  121 QPKLDIEDEQ SEDQKQNKRK KEASPEECDQ AVEGLSSAKA KAKAKQVQES VKAGQSIVRK 180
  181 FWARLLGIGP ALRAVASMSR ADWAAKLKHW KDEFVSTLQH YWLGTKLLWA DVRISSRLLV 240
  241 KLAGGKNLSR RERQQLTRTT ADIFRLVPFA VFIIVPFMEF LLPVFLKLFP NMLPSTFQDK 300
  301 MKEEEALKRK LKARMEYAKF LQDTAKEMAK EVQTSRSGEI KQTAEDLDEF LNKVRRGEHV 360
  361 SNDEILNFAK LFNDELTLDN MSRPRLVNMC KYMGIRPFGT DHYLRFMLRK KLQDIKNDDK 420
  421 MIQAEGVESL SEEELRQACR ERGHLGLLST EEMRQQLRDW LDLSLNHAVP SSLLILSRAF 480
  481 TVSGKMKPEE AVVATLSSLP DEVVDTVGTV LPSEDSVSER RRKLEFLEMQ EELIKEEEKK 540
  541 KEKEEKAKQE KEEKAKLKEP KAAEEDLALK EMTGPTAREE EELREAKQHD KEKLCNFSRA 600
  601 LAVLASASSV SKERQEFLSL VNKEIELYNS MLEKEGTEGE EEAKKAYMAA REESDKAAEV 660
  661 DEEEKVSSAL IEKVDAMLQK LEKEIDDVDA QIGNRWQILD RDLDGKVTPE EVASAAAYLK 720
  721 DTIGKEGVQE LVSNLSKDKD GKIRVEDIVK LASQTDENNE DEEEGRQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle