YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|215694387, gi...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLKCALRG FDLRALLILL IGLPILIFVI YLHGQKVTYF LRPIWEKPPK PFKVLPHYYN  60
   61 ENVSMANLCK LHGWKVRETP RRVFDAVLFS NELDILDIRW HELSPYVSEF VLLESNSTFT 120
  121 GLKKDLHFKE NRQRFEFAES RLTYGMIGGR FVKGENPFVE ESYQRVALDQ LIKIAGITDD 180
  181 DLLIMSDVDE IPSGHTINLL RWCDDIPEVL HLQLRNYLYS FEFFLDDKSW RASIHRYRAG 240
  241 KTRYAHFRQT DDLLADSGWH CSFCFRYISD FVFKMQAYSH VDRIRFKYFL NPKRIQHVIC 300
  301 RGADLFDMLP EEYTFQEIIA KLGPIPSTFS AVHLPAYLLE KVDQYSYLLP GRCMRESG

Type	Start	End	Confidence
Cytoplasmic	1	12	0.84
Transmembrane Helix	13	34	0.85
Non-Cytoplasmic	35	358	0.99