YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125539950
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMKGKGGAV DRRSSARWRM LLLCAFCFGL GMLFTDRFWT APDTSNHIMS QRRRQDRELQ  60
   61 LISEDCNTKR KHGEDKDIMG EVTKTHEAIQ LLDKSISTLQ MELAAKRSTL ELLRAGGSPV 120
  121 TSETSQPRKK AFVVIGVNTA FSSRKRRDSV RETWMPQGAK LQQLEDQKGI VIRFTIGHSA 180
  181 TSNSILDKAI DSEDAQHRDF LRLDHVEGYH ELSAKTKIFF STAVGIWDAD FYVKVDDDVH 240
  241 VNLGMLATTL ARHKSKPRTY IGCMKSGPVL ADKNVKYHEP EYWKFGEEGN KYFRHATGQI 300
  301 YAISKDLATY ISINQPILHK FANEDVSLGS WFIGLEVNHI DERNMCCGTP PDCEWKGQAG 360
  361 NVCVASFDWS CSGICKSVER IKEVHARCGE GDSAVWSALI

Type	Start	End	Confidence
Cytoplasmic	1	19	0.83
Transmembrane Helix	20	40	0.81
Non-Cytoplasmic	41	400	0.99