YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37654254
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKENSKHKL LTQNIQEIQD TMKRPNLRIM EIEENEDSQL KGPENVFNKI TKEKFPNLKK  60
   61 KIAIMALKAY RTPNKWDQKR KPSRHIIVKT LNAQNKERIL KSAREKRQVT YQRQTYENYT 120
  121 RLLKRDYESQ KSLVMQFVEP SQQFVKDSIR LVKRCTKPDR KEFQKIAMAT AIGFAIMGFI 180
  181 GFFVKLIHIP INNIIKKKKE EEEEEEEEEE EEEEEEEEDI LSFAGKWMEL QNVILSEKCR 240
  241 DANGEEPEEK KVQQQAQIGF QLKGGPQPDP TPLLKLWGIH KKGATVTVLG KIQQAAERVR 300
  301 CRYVHPTTEQ KLLTPLVELG KSWRKLRRRA TSRLNGPLRS LRHWITNQAA YTS

Type	Start	End	Confidence
Cytoplasmic	1	165	0.58
Transmembrane Helix	166	189	0.85
Non-Cytoplasmic	190	353	0.62