YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37626044
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDPTYPLF PIFAFVGCIL CLIPLPWHLQ AWNSGTCFFM AWTALACLNQ FVNSVVWSGN  60
   61 AINHAPIWCE ISIRILMGAS VGIPASSMCI VRRLYAIARS QKVAITRAEK RRAVIMDSLI 120
  121 CVLLPIVYVA LQVVVQGHRF DIFEDIGCYP IIYNTLLSYF ISFAPPLAIG LVSAVYSLSL 180
  181 YEFNRRRLQF NAFLNSGTSL TSGRYLRLMA LATTEMMLTT PLSIFIIYLN ATVSPIEPWI 240
  241 SWADTHYDYW RVGQYPRVLW QLNHLLVVSM ELTRWLAPFS AIVFFIFFGF AEEAKRHYKA 300
  301 FFAPVTKMFR RFFPASPILP SLSSKKALPS PAATERSFQP LKSAATTATI LPLHSATETV 360
  361 VSTESFNKTL YGFEHDPNYV IDIKAPAPAY NLQDTLSPTS TERTLHSDIT FSTNHTSRRF 420
  421 TM

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.86
Transmembrane Helix	7	29	0.89
Cytoplasmic	30	37	0.66
Transmembrane Helix	38	57	0.82
Non-Cytoplasmic	58	72	0.83
Transmembrane Helix	73	95	0.90
Cytoplasmic	96	112	0.97
Transmembrane Helix	113	135	0.90
Non-Cytoplasmic	136	158	0.90
Transmembrane Helix	159	180	0.92
Cytoplasmic	181	209	0.91
Transmembrane Helix	210	232	0.83
Non-Cytoplasmic	233	271	0.92
Transmembrane Helix	272	291	0.93
Cytoplasmic	292	422	0.94