YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TOCC_ORYSJ
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLAAAAVAV SFPRPAPPPR RCAPRRHRRA LAPRAASSSP SPSTAVAAPV YAPTPRDRAL  60
   61 RTPHSGYHYD GTARPFFEGW YFKVSIPECR QSFCFMYSVE NPLFRDGMSD LDRVIHGSRF 120
  121 TGVGAQILGA DDKYICQFTE KSNNFWGSRH ELMLGNTFIP NNGSTPPEGE VPPQEFSSRV 180
  181 LEGFQVTPIW HQGFIRDDGR SKYVPNVQTA RWEYSTRPVY GWGDVTSKQK STAGWLAAFP 240
  241 FFEPHWQICM AGGLSTGWIE WDGERFEFEN APSYSEKNWG AGFPRKWYWV QCNVFSGASG 300
  301 EVALTAAGGL RKIGLGETYE SPSLIGIHYE GKFYEFVPWT GTVSWDIAPW GHWKLSGENK 360
  361 NHLVEIEATT KEPGTALRAP TMEAGLVPAC KDTCYGDLRL QMWEKRNDGG KGKMILDATS 420
  421 NMAALEVGGG PWFNGWKGTT VSNEIVNNVV GTQVDVESLF PIPFLKPPGL

Type	Start	End	Confidence
Signal Peptide	1	22	0.77
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	470	0.97